ML-CFA: Standard Error Bias - Level-2 Factor Variances
Last updated: 2020-06-10
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Knit directory: mcfa-para-est/
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rm(list=ls())
source(paste0(getwd(),"/code/load_packages.R"))
#source(paste0(getwd(),"/code/get_data.R"))# general options
theme_set(theme_bw())
options(digits=3)# set up vectors of variable names
# set up vectors of variable names
pvec <- c(paste0('selambda1',1:6), paste0('selambda2',6:10), 'sepsiW12','sepsiB1', 'sepsiB2', 'sepsiB12', paste0('sethetaB',1:10))
# stored "true" values of parameters by each condition
ptvec <- c(paste0('EmpSElambda1',1:6), paste0('EmpSElambda2',6:10), 'EmpSEpsiW12','EmpSEpsiB1', 'EmpSEpsiB2', 'EmpSEpsiB12', paste0('EmpSEthetaB',1:10))
result <- read_csv(paste0(w.d, "/data/results_bias_se.csv"))Parsed with column specification:
cols(
N1 = col_double(),
N2 = col_double(),
ICC_LV = col_double(),
ICC_OV = col_double(),
Variable = col_character(),
Estimator = col_character(),
EmpSE = col_double(),
RB = col_double(),
RMSE = col_double(),
Bias = col_double(),
SampVar = col_double(),
muRE = col_double(),
mwRE = col_double(),
uwRE = col_double(),
nRep = col_double(),
estMean = col_double(),
estSD = col_double(),
wi = col_double()
)# Set conditions levels as categorical values
result <- result %>%
mutate(N1 = factor(N1, c("5", "10", "30")),
N2 = factor(N2, c("30", "50", "100", "200")),
ICC_OV = factor(ICC_OV, c("0.1","0.3", "0.5")),
ICC_LV = factor(ICC_LV, c("0.1", "0.5")))Summarizing Results
First, we will plot estimates (boxplots) to show how these estimates changed across conditions. To summarize the results we will average over the parameters that only differ with indices (e.g., factor loadings, factor variances). Meaning we will describe the “average factor loading standard error bias” by reporting the average standard error bias for factor loadings. Additionally, different conditions resulted in different “sample sizes.” By this we mean the number of usable replications. The different number of cases per condition was accounted for by creating a “weight” variable for each row of the result object. This meant that conditions that had more usable replications counted more towards to averages reported (or count as much as if we averaged over the individual replications).
Level-2 Factor Variances
sdat <- filter(result, Variable %in% c('psiB1', 'psiB2'))
sdat <- sdat %>%
group_by(N1, N2, ICC_OV, ICC_LV, Estimator) %>%
summarise(estMean = weighted.mean(estMean, wi),
estSD = weighted.mean(estSD, wi),
RB = weighted.mean(RB, wi),
RMSE = weighted.mean(RMSE, wi),
Bias = weighted.mean(Bias, wi),
SampVar = weighted.mean(SampVar, wi))Warning: Factor `N1` contains implicit NA, consider using
`forcats::fct_explicit_na`Warning: Factor `N2` contains implicit NA, consider using
`forcats::fct_explicit_na`Warning: Factor `ICC_OV` contains implicit NA, consider using
`forcats::fct_explicit_na`Warning: Factor `ICC_LV` contains implicit NA, consider using
`forcats::fct_explicit_na`# first, plot estimates
p1 <- ggplot(sdat, aes(y=estMean))+
geom_boxplot()+
labs(y="Average Level-2 Factor Variance SE")
p2 <- ggplot(sdat, aes(y=estSD))+
geom_boxplot()+
labs(y="SD of Level-2 Factor Variances SE")
p3 <- ggplot(sdat, aes(y=RB))+
geom_boxplot()+
geom_hline(yintercept=-10, color="red", linetype="dashed")+
geom_hline(yintercept=10, color="red", linetype="dashed")+
labs(y="Relative Bias of Standard Error")
p4 <- ggplot(sdat, aes(y=RMSE))+
geom_boxplot()+
labs(y="Root Mean Square Error")
p5 <- ggplot(sdat, aes(y=Bias))+
geom_boxplot()+
labs(y="Sqaured Bias")
p6 <- ggplot(sdat, aes(y=SampVar))+
geom_boxplot()+
labs(y="Sampling Variance of SE")
p <- (p1 + p2 + p3)/(p4 + p5 + p6) +
plot_annotation(title="Summarizing bias indices of LEVEL-2 FACTOR VARIANCE Standard Error")
pWarning: Removed 1 rows containing non-finite values (stat_boxplot).Warning: Removed 1 rows containing non-finite values (stat_boxplot).
Warning: Removed 1 rows containing non-finite values (stat_boxplot).
Warning: Removed 1 rows containing non-finite values (stat_boxplot).
Warning: Removed 1 rows containing non-finite values (stat_boxplot).
Warning: Removed 1 rows containing non-finite values (stat_boxplot).
Single Condition Breakdown
Estimation Method
ggplot(sdat, aes(y=estMean))+
geom_boxplot()+
labs(y="Average Level-2 Factor Variance SE",
title="LEVEL-2 FACTOR VARIANCE SE by Estimation Method",
subtitle="SE Estimates")+
facet_wrap(.~Estimator)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
ggplot(sdat, aes(y=estSD))+
geom_boxplot()+
labs(y="SD of Level-2 Factor Variances",
title="LEVEL-2 FACTOR VARIANCE SE by Estimation Method",
subtitle="Standard Deviation of SE Estimates")+
facet_wrap(.~Estimator)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
ggplot(sdat, aes(y=RB))+
geom_boxplot()+
geom_hline(yintercept=-10, color="red", linetype="dashed")+
geom_hline(yintercept=10, color="red", linetype="dashed")+
labs(y="Relative Bias",
title="LEVEL-2 FACTOR VARIANCE SE by Estimation Method",
subtitle="Relative Bias of SE Estimates")+
facet_wrap(.~Estimator)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
ggplot(sdat, aes(y=RMSE))+
geom_boxplot()+
labs(y="Root Mean Square Error",
title="LEVEL-2 FACTOR VARIANCE SE by Estimation Method",
subtitle="Root Mean Square Error of SE Estimates")+
facet_wrap(.~Estimator)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
ggplot(sdat, aes(y=Bias))+
geom_boxplot()+
labs(y="Sqaured Bias",
title="LEVEL-2 FACTOR VARIANCE SE by Estimation Method",
subtitle="Squared Bias of SE Estiamtes")+
facet_wrap(.~Estimator)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
ggplot(sdat, aes(y=SampVar))+
geom_boxplot()+
labs(y="Sampling Variance",
title="LEVEL-2 FACTOR VARIANCE SE by Estimation Method",
subtitle="Sampling Variance of SE Estimates")+
facet_wrap(.~Estimator)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
c <- sdat %>%
group_by(Estimator) %>%
summarise(est = mean(estMean),
RB = mean(RB),
RMSE = mean(RMSE),
Bias = mean(Bias),
SampVar =mean(SampVar))
kable(c, format='html', digits=4,
caption="Summary Indices of LEVEL-2 FACTOR VARIANCE Standard Error by Estimation Method") %>%
kable_styling(full_width = T)| Estimator | est | RB | RMSE | Bias | SampVar |
|---|---|---|---|---|---|
| NA | NaN | NaN | NaN | NaN | NaN |
Level-2 Sample Size
ggplot(sdat, aes(y=estMean))+
geom_boxplot()+
labs(y="Average Level-2 Factor Variance",
title="LEVEL-2 FACTOR VARIANCE SE by Level-2 Sample Size",
subtitle="Estimates")+
facet_wrap(.~N2)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
ggplot(sdat, aes(y=estSD))+
geom_boxplot()+
labs(y="SD of Level-2 Factor Variances",
title="LEVEL-2 FACTOR VARIANCE SE by Level-2 Sample Size",
subtitle="Standard Deviation of SE Estimates")+
facet_wrap(.~N2)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
ggplot(sdat, aes(y=RB))+
geom_boxplot()+
geom_hline(yintercept=-10, color="red", linetype="dashed")+
geom_hline(yintercept=10, color="red", linetype="dashed")+
labs(y="Relative Bias",
title="LEVEL-2 FACTOR VARIANCE by Level-2 Sample Size",
subtitle="Relative Bias SE Estimates")+
facet_wrap(.~N2)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
ggplot(sdat, aes(y=RMSE))+
geom_boxplot()+
labs(y="Root Mean Square Error",
title="LEVEL-2 FACTOR VARIANCE by Level-2 Sample Size",
subtitle="Root Mean Square Error")+
facet_wrap(.~N2)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
ggplot(sdat, aes(y=Bias))+
geom_boxplot()+
labs(y="Sqaured Bias",
title="LEVEL-2 FACTOR VARIANCE by Level-2 Sample Size",
subtitle="Squared Bias of SE Estimates")+
facet_wrap(.~N2)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
ggplot(sdat, aes(y=SampVar))+
geom_boxplot()+
labs(y="Sampling Variance of Estimates",
title="LEVEL-2 FACTOR VARIANCE by Level-2 Sample Size",
subtitle="Sampling Variance of SE Estimates")+
facet_wrap(.~N2)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
c <- sdat %>%
group_by(N2) %>%
summarise(est = mean(estMean),
RB = mean(RB),
RMSE = mean(RMSE),
Bias = mean(Bias),
SampVar =mean(SampVar))Warning: Factor `N2` contains implicit NA, consider using
`forcats::fct_explicit_na`kable(c, format='html', digits=3,
caption="Summary Indices of LEVEL-2 FACTOR VARIANCE by Level-2 Sample Size") %>%
kable_styling(full_width = T)| N2 | est | RB | RMSE | Bias | SampVar |
|---|---|---|---|---|---|
| NA | NaN | NaN | NaN | NaN | NaN |
Level-1 Sample Size
ggplot(sdat, aes(y=estMean))+
geom_boxplot()+
labs(y="Average Level-2 Factor Variance",
title="LEVEL-2 FACTOR VARIANCE by Level-1",
subtitle="SE Estimates")+
facet_wrap(.~N1)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
ggplot(sdat, aes(y=estSD))+
geom_boxplot()+
labs(y="SD of Level-2 Factor Variances",
title="LEVEL-2 FACTOR VARIANCE by Level-1 Sample Size",
subtitle="Standard Deviation of SE Estimates")+
facet_wrap(.~N1)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
ggplot(sdat, aes(y=RB))+
geom_boxplot()+
geom_hline(yintercept=-10, color="red", linetype="dashed")+
geom_hline(yintercept=10, color="red", linetype="dashed")+
labs(y="Relative Bias",
title="LEVEL-2 FACTOR VARIANCE by Level-1 Sample Size",
subtitle="Relative Bias of SE Estimates")+
facet_wrap(.~N1)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
ggplot(sdat, aes(y=RMSE))+
geom_boxplot()+
labs(y="Root Mean Square Error",
title="LEVEL-2 FACTOR VARIANCE by Level-1 Sample Size",
subtitle="Root Mean Square Error")+
facet_wrap(.~N1)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
ggplot(sdat, aes(y=Bias))+
geom_boxplot()+
labs(y="Sqaured Bias",
title="LEVEL-2 FACTOR VARIANCE by Level-1 Sample Size",
subtitle="Squared Bias of SE Estimates")+
facet_wrap(.~N1)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
ggplot(sdat, aes(y=SampVar))+
geom_boxplot()+
labs(y="Sampling Variance of Estimates",
title="LEVEL-2 FACTOR VARIANCE by Level-1 Sample Size",
subtitle="Sampling Variance of SE Estimates")+
facet_wrap(.~N1)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
c <- sdat %>%
group_by(N1) %>%
summarise(est = mean(estMean),
RB = mean(RB),
RMSE = mean(RMSE),
Bias = mean(Bias),
SampVar =mean(SampVar))Warning: Factor `N1` contains implicit NA, consider using
`forcats::fct_explicit_na`kable(c, format='html', digits=3,
caption="Summary Indices of LEVEL-2 FACTOR VARIANCE by Level-1 Sample Size") %>%
kable_styling(full_width = T)| N1 | est | RB | RMSE | Bias | SampVar |
|---|---|---|---|---|---|
| NA | NaN | NaN | NaN | NaN | NaN |
ICC Observed Variables
ggplot(sdat, aes(y=estMean))+
geom_boxplot()+
labs(y="Average Level-2 Factor Variance",
title="LEVEL-2 FACTOR VARIANCE by ICC of Observed Variables",
subtitle="SE Estimates")+
facet_wrap(.~ICC_OV)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
ggplot(sdat, aes(y=estSD))+
geom_boxplot()+
labs(y="SD of Level-2 Factor Variances",
title="LEVEL-2 FACTOR VARIANCE by ICC of Observed Variables",
subtitle="Standard Deviation of SE Estimates")+
facet_wrap(.~ICC_OV)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
ggplot(sdat, aes(y=RB))+
geom_boxplot()+
geom_hline(yintercept=-10, color="red", linetype="dashed")+
geom_hline(yintercept=10, color="red", linetype="dashed")+
labs(y="Relative Bias",
title="LEVEL-2 FACTOR VARIANCE by ICC of Observed Variables",
subtitle="Relative Bias of SE Estimates")+
facet_wrap(.~ICC_OV)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
ggplot(sdat, aes(y=RMSE))+
geom_boxplot()+
labs(y="Root Mean Square Error",
title="LEVEL-2 FACTOR VARIANCE by ICC of Observed Variables",
subtitle="Root Mean Square Error of SE Estimates")+
facet_wrap(.~ICC_OV)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
ggplot(sdat, aes(y=Bias))+
geom_boxplot()+
labs(y="Sqaured Bias",
title="LEVEL-2 FACTOR VARIANCE by ICC of Observed Variables",
subtitle="Squared Bias of SE Estimates")+
facet_wrap(.~ICC_OV)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
ggplot(sdat, aes(y=SampVar))+
geom_boxplot()+
labs(y="Sampling Variance of Estimates",
title="LEVEL-2 FACTOR VARIANCE by ICC of Observed Variables",
subtitle="Sampling Variance of SE Estimates")+
facet_wrap(.~ICC_OV)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
c <- sdat %>%
group_by(ICC_OV) %>%
summarise(est = mean(estMean),
RB = mean(RB),
RMSE = mean(RMSE),
Bias = mean(Bias),
SampVar =mean(SampVar))Warning: Factor `ICC_OV` contains implicit NA, consider using
`forcats::fct_explicit_na`kable(c, format='html', digits=3, caption="Summary Indices of LEVEL-2 FACTOR VARIANCE by ICC of Observed Variables") %>%
kable_styling(full_width = T)| ICC_OV | est | RB | RMSE | Bias | SampVar |
|---|---|---|---|---|---|
| NA | NaN | NaN | NaN | NaN | NaN |
ICC Latent Variables
ggplot(sdat, aes(y=estMean))+
geom_boxplot()+
labs(y="Average Level-2 Factor Variance",
title="LEVEL-2 FACTOR VARIANCE by ICC of Latent Variables",
subtitle="SE Estimates")+
facet_wrap(.~ICC_LV)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
ggplot(sdat, aes(y=estSD))+
geom_boxplot()+
labs(y="SD of Level-2 Factor Variances",
title="LEVEL-2 FACTOR VARIANCE by ICC of Latent Variables",
subtitle="Standard Deviation of SE Estimates")+
facet_wrap(.~ICC_LV)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
ggplot(sdat, aes(y=RB))+
geom_boxplot()+
geom_hline(yintercept=-10, color="red", linetype="dashed")+
geom_hline(yintercept=10, color="red", linetype="dashed")+
labs(y="Relative Bias",
title="LEVEL-2 FACTOR VARIANCE by ICC of Latent Variables",
subtitle="Relative Bias of SE Estimates")+
facet_wrap(.~ICC_LV)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
ggplot(sdat, aes(y=RMSE))+
geom_boxplot()+
labs(y="Root Mean Square Error",
title="LEVEL-2 FACTOR VARIANCE by ICC of Latent Variables",
subtitle="Root Mean Square Error of SE Estimates")+
facet_wrap(.~ICC_LV)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
ggplot(sdat, aes(y=Bias))+
geom_boxplot()+
labs(y="Sqaured Bias",
title="LEVEL-2 FACTOR VARIANCE by ICC of Latent Variables",
subtitle="Squared Bias of SE Estimates")+
facet_wrap(.~ICC_LV)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
ggplot(sdat, aes(y=SampVar))+
geom_boxplot()+
labs(y="Sampling Variance of Estimates",
title="LEVEL-2 FACTOR VARIANCE by ICC of Latent Variables",
subtitle="Sampling Variance of SE Estimates")+
facet_wrap(.~ICC_LV)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
c <- sdat %>%
group_by(ICC_LV) %>%
summarise(est = mean(estMean),
RB = mean(RB),
RMSE = mean(RMSE),
Bias = mean(Bias),
SampVar =mean(SampVar))Warning: Factor `ICC_LV` contains implicit NA, consider using
`forcats::fct_explicit_na`kable(c, format='html', digits=3,
caption="Summary Indices of LEVEL-2 FACTOR VARIANCE by ICC of Latent Variables") %>%
kable_styling(full_width = T)| ICC_LV | est | RB | RMSE | Bias | SampVar |
|---|---|---|---|---|---|
| NA | NaN | NaN | NaN | NaN | NaN |
SE of Level-2 Factor Variances by Estimation Method and Sample Sizes
Estimation Method & Level-2 Sample Size
ggplot(sdat, aes(y=estMean))+
geom_boxplot()+
labs(y="Average Level-2 Factor Variance")+
facet_grid(N2~Estimator)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
ggplot(sdat, aes(y=RB))+
geom_boxplot()+
geom_hline(yintercept=-10, color="red", linetype="dashed")+
geom_hline(yintercept=10, color="red", linetype="dashed")+
labs(y="Relative Bias")+
facet_grid(N2~Estimator)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
ggplot(sdat, aes(y=RMSE))+
geom_boxplot()+
labs(y="Root Mean Square Error")+
facet_grid(N2~Estimator)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
c <- sdat %>%
group_by(Estimator, N2) %>%
summarise(est = mean(estMean),
RB = mean(RB),
RMSE = mean(RMSE),
Bias = mean(Bias),
SampVar =mean(SampVar))Warning: Factor `N2` contains implicit NA, consider using
`forcats::fct_explicit_na`c1 <- cbind(c[ c$Estimator == 'MLR', c( 'N2', 'est', 'RB', 'RMSE')],
c[ c$Estimator == 'ULSMV', c('est', 'RB', 'RMSE')],
c[ c$Estimator == 'WLSMV', c('est', 'RB', 'RMSE')])
colnames(c1) <- c('N2', rep(c('est', 'RB', 'RMSE'), 3))
kable(c1, format='html', digits=3, row.names = F) %>%
kable_styling(full_width = T) %>%
add_header_above(c(' '=1, 'MLR'=3, 'ULSMV'=3, 'WLSMV'=3))| N2 | est | RB | RMSE | est | RB | RMSE | est | RB | RMSE |
|---|---|---|---|---|---|---|---|---|---|
| NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
Estimation Method & Level-1 Sample Size
ggplot(sdat, aes(y=estMean))+
geom_boxplot()+
labs(y="Average Level-2 Factor Variance")+
facet_grid(N1~Estimator)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
ggplot(sdat, aes(y=RB))+
geom_boxplot()+
geom_hline(yintercept=-10, color="red", linetype="dashed")+
geom_hline(yintercept=10, color="red", linetype="dashed")+
labs(y="Relative Bias")+
facet_grid(N1~Estimator)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
ggplot(sdat, aes(y=RMSE))+
geom_boxplot()+
labs(y="Root Mean Square Error")+
facet_grid(N1~Estimator)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
c <- sdat %>%
group_by(Estimator, N1) %>%
summarise(est = mean(estMean),
RB = mean(RB),
RMSE = mean(RMSE),
Bias = mean(Bias),
SampVar =mean(SampVar))Warning: Factor `N1` contains implicit NA, consider using
`forcats::fct_explicit_na`c1 <- cbind(c[ c$Estimator == 'MLR', c( 'N1', 'est', 'RB', 'RMSE')],
c[ c$Estimator == 'ULSMV', c('est', 'RB', 'RMSE')],
c[ c$Estimator == 'WLSMV', c('est', 'RB', 'RMSE')])
colnames(c1) <- c('N1', rep(c('est', 'RB', 'RMSE'), 3))
kable(c1, format='html', digits=3, row.names = F) %>%
kable_styling(full_width = T) %>%
add_header_above(c(' '=1, 'MLR'=3, 'ULSMV'=3, 'WLSMV'=3))| N1 | est | RB | RMSE | est | RB | RMSE | est | RB | RMSE |
|---|---|---|---|---|---|---|---|---|---|
| NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
Estimation Method, Level-2 Sample Size & Level-1 Sample Size
ggplot(sdat, aes(y=estMean,x=N1, group=N1))+
geom_boxplot()+
labs(y="Average Level-2 Factor Variance")+
facet_grid(N2~Estimator)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
ggplot(sdat, aes(y=RB,x=N1, group=N1))+
geom_boxplot()+
geom_hline(yintercept=-10, color="red", linetype="dashed")+
geom_hline(yintercept=10, color="red", linetype="dashed")+
labs(y="Relative Bias")+
facet_grid(N2~Estimator)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
ggplot(sdat, aes(y=RMSE,x=N1, group=N1))+
geom_boxplot()+
labs(y="Root Mean Square Error")+
facet_grid(N2~Estimator)Warning: Removed 1 rows containing non-finite values (stat_boxplot).
c <- sdat %>%
group_by(Estimator, N2, N1) %>%
summarise(est = mean(estMean),
RB = mean(RB),
RMSE = mean(RMSE),
Bias = mean(Bias),
SampVar =mean(SampVar))Warning: Factor `N2` contains implicit NA, consider using
`forcats::fct_explicit_na`Warning: Factor `N1` contains implicit NA, consider using
`forcats::fct_explicit_na`c1 <- cbind(c[ c$Estimator == 'MLR', c( 'N2','N1', 'est', 'RB', 'RMSE')],
c[ c$Estimator == 'ULSMV', c('est', 'RB', 'RMSE')],
c[ c$Estimator == 'WLSMV', c('est', 'RB', 'RMSE')])
colnames(c1) <- c('N2','N1', rep(c('est', 'RB', 'RMSE'), 3))
kable(c1, format='html', digits=3, row.names = F) %>%
kable_styling(full_width = T) %>%
add_header_above(c(' '=2, 'MLR'=3, 'ULSMV'=3, 'WLSMV'=3))| N2 | N1 | est | RB | RMSE | est | RB | RMSE | est | RB | RMSE |
|---|---|---|---|---|---|---|---|---|---|---|
| NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
Relative Efficiency by Sample Sizes
sdat <- filter(result, Variable %like% 'lambda')
c <- sdat %>%
group_by(Estimator, N2, N1) %>%
summarise(mu = weighted.mean(muRE, wi, na.rm=T),
mw = weighted.mean(mwRE, wi, na.rm=T),
uw = weighted.mean(uwRE, wi, na.rm=T))
c1 <- cbind(c[ c$Estimator == 'MLR', c( 'N2','N1', 'mu', 'mw', 'uw')])
colnames(c1) <- c('N2','N1',c('MLR/ULSMV', 'MLR/WLSMV', 'ULSMV/WLSMV'))
kable(c1, format='html', digits=3, row.names = F) %>%
kable_styling(full_width = T)| N2 | N1 | MLR/ULSMV | MLR/WLSMV | ULSMV/WLSMV |
|---|---|---|---|---|
| 30 | 5 | 0.776 | 0.887 | 41.19 |
| 30 | 10 | 0.290 | 0.449 | 2.76 |
| 30 | 30 | 0.202 | 0.389 | 3.33 |
| 50 | 5 | 0.341 | 0.520 | 2.50 |
| 50 | 10 | 0.248 | 0.482 | 4.43 |
| 50 | 30 | 0.233 | 0.368 | 4.24 |
| 100 | 5 | 0.276 | 0.442 | 3.58 |
| 100 | 10 | 0.320 | 0.471 | 5.01 |
| 100 | 30 | 0.268 | 0.405 | 4.56 |
| 200 | 5 | 0.326 | 0.423 | 4.23 |
| 200 | 10 | 0.347 | 0.476 | 6.13 |
| 200 | 30 | 0.310 | 0.447 | 8.76 |
Relative Efficiency by All Conditions
c <- sdat %>%
group_by(Estimator, N2, N1, ICC_OV, ICC_LV) %>%
summarise(mu = weighted.mean(muRE, wi),
mw = weighted.mean(mwRE, wi),
uw = weighted.mean(uwRE, wi))
c1 <- cbind(c[ c$Estimator == 'MLR', c( 'N2','N1','ICC_OV', 'ICC_LV', 'mu', 'mw', 'uw')])
colnames(c1) <- c('N2','N1', 'ICC_OV', 'ICC_LV',c('MLR/ULSMV', 'MLR/WLSMV', 'ULSMV/WLSMV'))
kable(c1, format='html', digits=3, row.names = F) %>%
kable_styling(full_width = T)| N2 | N1 | ICC_OV | ICC_LV | MLR/ULSMV | MLR/WLSMV | ULSMV/WLSMV |
|---|---|---|---|---|---|---|
| 30 | 5 | 0.1 | 0.1 | 3.338 | 2.869 | 0.938 |
| 30 | 5 | 0.1 | 0.5 | 1.040 | 1.547 | 1.613 |
| 30 | 5 | 0.3 | 0.1 | 0.662 | 0.734 | 1.114 |
| 30 | 5 | 0.3 | 0.5 | 0.195 | 0.340 | 2.979 |
| 30 | 5 | 0.5 | 0.1 | 0.096 | 0.293 | 11.694 |
| 30 | 5 | 0.5 | 0.5 | 0.054 | 0.287 | 142.847 |
| 30 | 10 | 0.1 | 0.1 | 0.646 | 0.528 | 0.819 |
| 30 | 10 | 0.1 | 0.5 | 0.556 | 0.974 | 1.823 |
| 30 | 10 | 0.3 | 0.1 | 0.375 | 0.381 | 1.023 |
| 30 | 10 | 0.3 | 0.5 | 0.183 | 0.354 | 2.003 |
| 30 | 10 | 0.5 | 0.1 | 0.171 | 0.369 | 2.526 |
| 30 | 10 | 0.5 | 0.5 | 0.050 | 0.308 | 6.320 |
| 30 | 30 | 0.1 | 0.1 | 0.476 | 0.421 | 0.884 |
| 30 | 30 | 0.1 | 0.5 | 0.216 | 0.884 | 4.036 |
| 30 | 30 | 0.3 | 0.1 | 0.346 | 0.431 | 1.249 |
| 30 | 30 | 0.3 | 0.5 | 0.077 | 0.258 | 3.325 |
| 30 | 30 | 0.5 | 0.1 | 0.059 | 0.159 | 3.698 |
| 30 | 30 | 0.5 | 0.5 | 0.020 | 0.102 | 6.272 |
| 50 | 5 | 0.1 | 0.1 | 0.722 | 0.776 | 1.387 |
| 50 | 5 | 0.1 | 0.5 | 0.721 | 1.124 | 1.652 |
| 50 | 5 | 0.3 | 0.1 | 0.403 | 0.466 | 1.159 |
| 50 | 5 | 0.3 | 0.5 | 0.215 | 0.357 | 1.679 |
| 50 | 5 | 0.5 | 0.1 | 0.273 | 0.447 | 1.665 |
| 50 | 5 | 0.5 | 0.5 | 0.057 | 0.299 | 5.510 |
| 50 | 10 | 0.1 | 0.1 | 0.573 | 0.511 | 0.887 |
| 50 | 10 | 0.1 | 0.5 | 0.176 | 0.930 | 5.319 |
| 50 | 10 | 0.3 | 0.1 | 0.416 | 0.405 | 0.968 |
| 50 | 10 | 0.3 | 0.5 | 0.195 | 0.373 | 1.962 |
| 50 | 10 | 0.5 | 0.1 | 0.113 | 0.373 | 5.555 |
| 50 | 10 | 0.5 | 0.5 | 0.032 | 0.332 | 11.040 |
| 50 | 30 | 0.1 | 0.1 | 0.499 | 0.456 | 0.914 |
| 50 | 30 | 0.1 | 0.5 | 0.242 | 0.624 | 2.667 |
| 50 | 30 | 0.3 | 0.1 | 0.409 | 0.456 | 1.117 |
| 50 | 30 | 0.3 | 0.5 | 0.105 | 0.296 | 2.806 |
| 50 | 30 | 0.5 | 0.1 | 0.094 | 0.198 | 2.096 |
| 50 | 30 | 0.5 | 0.5 | 0.023 | 0.122 | 14.391 |
| 100 | 5 | 0.1 | 0.1 | 0.536 | 0.494 | 0.922 |
| 100 | 5 | 0.1 | 0.5 | 0.139 | 0.721 | 5.172 |
| 100 | 5 | 0.3 | 0.1 | 0.432 | 0.444 | 1.024 |
| 100 | 5 | 0.3 | 0.5 | 0.275 | 0.377 | 1.381 |
| 100 | 5 | 0.5 | 0.1 | 0.314 | 0.369 | 1.208 |
| 100 | 5 | 0.5 | 0.5 | 0.038 | 0.305 | 9.981 |
| 100 | 10 | 0.1 | 0.1 | 0.494 | 0.482 | 0.974 |
| 100 | 10 | 0.1 | 0.5 | 0.405 | 0.666 | 1.640 |
| 100 | 10 | 0.3 | 0.1 | 0.486 | 0.492 | 1.011 |
| 100 | 10 | 0.3 | 0.5 | 0.228 | 0.424 | 1.864 |
| 100 | 10 | 0.5 | 0.1 | 0.315 | 0.381 | 1.213 |
| 100 | 10 | 0.5 | 0.5 | 0.017 | 0.360 | 21.508 |
| 100 | 30 | 0.1 | 0.1 | 0.608 | 0.588 | 0.964 |
| 100 | 30 | 0.1 | 0.5 | 0.243 | 0.527 | 2.209 |
| 100 | 30 | 0.3 | 0.1 | 0.485 | 0.505 | 1.040 |
| 100 | 30 | 0.3 | 0.5 | 0.097 | 0.358 | 4.122 |
| 100 | 30 | 0.5 | 0.1 | 0.133 | 0.235 | 1.769 |
| 100 | 30 | 0.5 | 0.5 | 0.011 | 0.170 | 16.345 |
| 200 | 5 | 0.1 | 0.1 | 0.470 | 0.464 | 0.989 |
| 200 | 5 | 0.1 | 0.5 | 0.442 | 0.513 | 1.169 |
| 200 | 5 | 0.3 | 0.1 | 0.407 | 0.412 | 1.010 |
| 200 | 5 | 0.3 | 0.5 | 0.290 | 0.416 | 1.431 |
| 200 | 5 | 0.5 | 0.1 | 0.354 | 0.373 | 1.058 |
| 200 | 5 | 0.5 | 0.5 | 0.021 | 0.353 | 18.295 |
| 200 | 10 | 0.1 | 0.1 | 0.532 | 0.536 | 1.008 |
| 200 | 10 | 0.1 | 0.5 | 0.412 | 0.514 | 1.255 |
| 200 | 10 | 0.3 | 0.1 | 0.498 | 0.497 | 0.998 |
| 200 | 10 | 0.3 | 0.5 | 0.240 | 0.453 | 1.895 |
| 200 | 10 | 0.5 | 0.1 | 0.398 | 0.445 | 1.122 |
| 200 | 10 | 0.5 | 0.5 | 0.014 | 0.406 | 29.382 |
| 200 | 30 | 0.1 | 0.1 | 0.653 | 0.640 | 0.977 |
| 200 | 30 | 0.1 | 0.5 | 0.267 | 0.497 | 1.945 |
| 200 | 30 | 0.3 | 0.1 | 0.561 | 0.568 | 1.018 |
| 200 | 30 | 0.3 | 0.5 | 0.152 | 0.435 | 2.944 |
| 200 | 30 | 0.5 | 0.1 | 0.210 | 0.304 | 1.462 |
| 200 | 30 | 0.5 | 0.5 | 0.005 | 0.219 | 43.158 |
Manuscript Table
sdat <- filter(result, Variable %like% 'lambda')
c <- sdat %>%
group_by(Estimator, N2, N1) %>%
summarise(est = weighted.mean(estMean, wi),
RB = weighted.mean(RB, wi),
RMSE = weighted.mean(RMSE, wi))
c1 <- cbind(c[ c$Estimator == 'MLR', c( 'N2','N1', 'est', 'RB', 'RMSE')],
c[ c$Estimator == 'ULSMV', c('est', 'RB', 'RMSE')],
c[ c$Estimator == 'WLSMV', c('est', 'RB', 'RMSE')])
colnames(c1) <- c('N2','N1', rep(c('est', 'RB', 'RMSE'), 3))
kable(c1, format='html', digits=3, row.names = F) %>%
kable_styling(full_width = T) %>%
add_header_above(c(' '=2, 'MLR'=3, 'ULSMV'=3, 'WLSMV'=3))| N2 | N1 | est | RB | RMSE | est | RB | RMSE | est | RB | RMSE |
|---|---|---|---|---|---|---|---|---|---|---|
| 30 | 5 | 0.088 | 3.129 | 0.001 | 0.376 | -7.46 | 146.721 | 0.158 | -19.206 | 0.007 |
| 30 | 10 | 0.058 | -0.654 | 0.000 | 0.151 | -16.94 | 0.014 | 0.107 | -13.439 | 0.001 |
| 30 | 30 | 0.033 | -1.398 | 0.000 | 0.147 | 5.97 | 0.030 | 0.077 | 9.365 | 0.001 |
| 50 | 5 | 0.065 | 0.930 | 0.000 | 0.145 | -22.55 | 0.012 | 0.122 | -12.602 | 0.001 |
| 50 | 10 | 0.044 | -0.542 | 0.000 | 0.106 | -22.86 | 0.010 | 0.083 | -8.724 | 0.000 |
| 50 | 30 | 0.026 | -1.320 | 0.000 | 0.093 | -1.29 | 0.093 | 0.055 | 4.642 | 0.000 |
| 100 | 5 | 0.045 | 0.618 | 0.000 | 0.098 | -17.71 | 0.007 | 0.087 | -6.739 | 0.000 |
| 100 | 10 | 0.031 | -0.112 | 0.000 | 0.071 | -13.25 | 0.005 | 0.060 | -4.499 | 0.000 |
| 100 | 30 | 0.018 | -0.199 | 0.000 | 0.056 | -8.46 | 0.003 | 0.037 | 2.416 | 0.000 |
| 200 | 5 | 0.032 | 0.259 | 0.000 | 0.068 | -12.48 | 0.002 | 0.062 | -3.061 | 0.000 |
| 200 | 10 | 0.022 | 0.325 | 0.000 | 0.050 | -10.95 | 0.002 | 0.043 | -2.036 | 0.000 |
| 200 | 30 | 0.013 | 0.086 | 0.000 | 0.037 | -9.37 | 0.004 | 0.025 | 0.711 | 0.000 |
print(xtable(c1, digits = 3,align=c("l", "l", "l", rep("r",9)),
display=c("s", "d","d", rep("f",9)),
caption="Mean Level-2 Factor Variance, Relative Bias, and RMSE by Estimation Method",
label="tb:fct"),
booktabs = T, include.rownames = F,
caption.placement = "top")% latex table generated in R 3.6.3 by xtable 1.8-4 package
% Wed Jun 10 15:47:05 2020
\begin{table}[ht]
\centering
\caption{Mean Level-2 Factor Variance, Relative Bias, and RMSE by Estimation Method}
\label{tb:fct}
\begin{tabular}{llrrrrrrrrr}
\toprule
N2 & N1 & est & RB & RMSE & est & RB & RMSE & est & RB & RMSE \\
\midrule
30 & 5 & 0.088 & 3.129 & 0.001 & 0.376 & -7.462 & 146.721 & 0.158 & -19.206 & 0.007 \\
30 & 10 & 0.058 & -0.654 & 0.000 & 0.151 & -16.943 & 0.014 & 0.107 & -13.439 & 0.001 \\
30 & 30 & 0.033 & -1.398 & 0.000 & 0.147 & 5.974 & 0.030 & 0.077 & 9.365 & 0.001 \\
50 & 5 & 0.065 & 0.930 & 0.000 & 0.145 & -22.552 & 0.012 & 0.122 & -12.602 & 0.001 \\
50 & 10 & 0.044 & -0.542 & 0.000 & 0.106 & -22.859 & 0.010 & 0.083 & -8.724 & 0.000 \\
50 & 30 & 0.026 & -1.320 & 0.000 & 0.093 & -1.292 & 0.093 & 0.055 & 4.642 & 0.000 \\
100 & 5 & 0.045 & 0.618 & 0.000 & 0.098 & -17.714 & 0.007 & 0.087 & -6.739 & 0.000 \\
100 & 10 & 0.031 & -0.112 & 0.000 & 0.071 & -13.253 & 0.005 & 0.060 & -4.499 & 0.000 \\
100 & 30 & 0.018 & -0.199 & 0.000 & 0.056 & -8.465 & 0.003 & 0.037 & 2.416 & 0.000 \\
200 & 5 & 0.032 & 0.259 & 0.000 & 0.068 & -12.482 & 0.002 & 0.062 & -3.061 & 0.000 \\
200 & 10 & 0.022 & 0.325 & 0.000 & 0.050 & -10.950 & 0.002 & 0.043 & -2.036 & 0.000 \\
200 & 30 & 0.013 & 0.086 & 0.000 & 0.037 & -9.371 & 0.004 & 0.025 & 0.711 & 0.000 \\
\bottomrule
\end{tabular}
\end{table}sessionInfo()R version 3.6.3 (2020-02-29)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 18362)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.1252
[2] LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] xtable_1.8-4 kableExtra_1.1.0 cowplot_1.0.0
[4] MplusAutomation_0.7-3 data.table_1.12.8 patchwork_1.0.0
[7] forcats_0.5.0 stringr_1.4.0 dplyr_0.8.5
[10] purrr_0.3.4 readr_1.3.1 tidyr_1.1.0
[13] tibble_3.0.1 ggplot2_3.3.0 tidyverse_1.3.0
[16] workflowr_1.6.2
loaded via a namespace (and not attached):
[1] httr_1.4.1 jsonlite_1.6.1 viridisLite_0.3.0 gsubfn_0.7
[5] modelr_0.1.8 assertthat_0.2.1 highr_0.8 pander_0.6.3
[9] blob_1.2.1 cellranger_1.1.0 yaml_2.2.1 pillar_1.4.4
[13] backports_1.1.7 lattice_0.20-38 glue_1.4.1 digest_0.6.25
[17] promises_1.1.0 rvest_0.3.5 colorspace_1.4-1 htmltools_0.4.0
[21] httpuv_1.5.2 plyr_1.8.6 pkgconfig_2.0.3 broom_0.5.6
[25] haven_2.3.0 scales_1.1.1 webshot_0.5.2 later_1.0.0
[29] git2r_0.27.1 farver_2.0.3 generics_0.0.2 ellipsis_0.3.1
[33] withr_2.2.0 cli_2.0.2 proto_1.0.0 magrittr_1.5
[37] crayon_1.3.4 readxl_1.3.1 evaluate_0.14 fs_1.4.1
[41] fansi_0.4.1 nlme_3.1-144 xml2_1.3.2 tools_3.6.3
[45] hms_0.5.3 lifecycle_0.2.0 munsell_0.5.0 reprex_0.3.0
[49] compiler_3.6.3 rlang_0.4.6 grid_3.6.3 rstudioapi_0.11
[53] texreg_1.36.23 labeling_0.3 rmarkdown_2.1 boot_1.3-24
[57] gtable_0.3.0 DBI_1.1.0 R6_2.4.1 lubridate_1.7.8
[61] knitr_1.28 rprojroot_1.3-2 stringi_1.4.6 parallel_3.6.3
[65] Rcpp_1.0.4.6 vctrs_0.3.0 dbplyr_1.4.4 tidyselect_1.1.0
[69] xfun_0.14 coda_0.19-3
sessionInfo()R version 3.6.3 (2020-02-29)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 18362)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.1252
[2] LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] xtable_1.8-4 kableExtra_1.1.0 cowplot_1.0.0
[4] MplusAutomation_0.7-3 data.table_1.12.8 patchwork_1.0.0
[7] forcats_0.5.0 stringr_1.4.0 dplyr_0.8.5
[10] purrr_0.3.4 readr_1.3.1 tidyr_1.1.0
[13] tibble_3.0.1 ggplot2_3.3.0 tidyverse_1.3.0
[16] workflowr_1.6.2
loaded via a namespace (and not attached):
[1] httr_1.4.1 jsonlite_1.6.1 viridisLite_0.3.0 gsubfn_0.7
[5] modelr_0.1.8 assertthat_0.2.1 highr_0.8 pander_0.6.3
[9] blob_1.2.1 cellranger_1.1.0 yaml_2.2.1 pillar_1.4.4
[13] backports_1.1.7 lattice_0.20-38 glue_1.4.1 digest_0.6.25
[17] promises_1.1.0 rvest_0.3.5 colorspace_1.4-1 htmltools_0.4.0
[21] httpuv_1.5.2 plyr_1.8.6 pkgconfig_2.0.3 broom_0.5.6
[25] haven_2.3.0 scales_1.1.1 webshot_0.5.2 later_1.0.0
[29] git2r_0.27.1 farver_2.0.3 generics_0.0.2 ellipsis_0.3.1
[33] withr_2.2.0 cli_2.0.2 proto_1.0.0 magrittr_1.5
[37] crayon_1.3.4 readxl_1.3.1 evaluate_0.14 fs_1.4.1
[41] fansi_0.4.1 nlme_3.1-144 xml2_1.3.2 tools_3.6.3
[45] hms_0.5.3 lifecycle_0.2.0 munsell_0.5.0 reprex_0.3.0
[49] compiler_3.6.3 rlang_0.4.6 grid_3.6.3 rstudioapi_0.11
[53] texreg_1.36.23 labeling_0.3 rmarkdown_2.1 boot_1.3-24
[57] gtable_0.3.0 DBI_1.1.0 R6_2.4.1 lubridate_1.7.8
[61] knitr_1.28 rprojroot_1.3-2 stringi_1.4.6 parallel_3.6.3
[65] Rcpp_1.0.4.6 vctrs_0.3.0 dbplyr_1.4.4 tidyselect_1.1.0
[69] xfun_0.14 coda_0.19-3